This Pollutants and IBD Scoping Review Search_readme.txt file was generated on 20241216 by Olivia Given Castello ------------------- GENERAL INFORMATION ------------------- 1. Title of Dataset: Pollutants and Inflammatory Bowel Disease (IBD) Scoping Review Search Strategy 2. Author Information: Principal Investigator Contact Information Name: Oriana M. Damas, MD, MSCTI Institution: Crohn's and Colitis Center, Division of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine Address: 1120 NW 14th Street, Miami, FL 33136 Email: omazorra@med.miami.edu ORCID: N/A Associate or Co-investigator Contact Information Name: Sarah Altajar, MD Institution: Gastroenterology and Hepatology Fellow, University of Miami Health System Email: sarah.altajar@jhsmiami.org ORCID: N/A Associate or Co-investigator Contact Information Name: Lauren Sanchez Institution: Temple University, Lewis Katz School of Medicine Address: 3500 N Broad St, Philadelphia, PA 19140 Email: tum93517@temple.edu ORCID: N/A Librarian Co-Author Contact Information Name: Olivia Given Castello, MSLIS Institution: Temple University Address: Charles Library, 1900 North 13th Street, Philadelphia, PA 19122 Email: olivia.castello@temple.edu ORCID: https://orcid.org/0000-0002-2721-9809 3. Date of data collection (single date, range, approximate date: 20240430 4. Geographic location of data collection (change default if needed): Charles Library, Temple University, 1900 North 13th Street, Philadelphia, PA 19122 5. Information about funding sources or sponsorship that supported the collection of the data: N/A -------------------------- SHARING/ACCESS INFORMATION -------------------------- 1. Licenses/restrictions placed on the data, or limitations of reuse (If they donΥt decide on a license, we can place an embargo up until they know): Creative Commons CC-BY-NC-SA License 2. Recommended citation for the data: Castello, O.G., Damas, O.M., Altar, S., & Sanchez, L. Search Strategies for a scoping review of pollutants and inflammatory bowel disease research. April 30, 2024. Temple University Libraries, Evidence Synthesis and Systematic Review Service. 3. Citation for and links to publications that cite or use the data: Sanchez, L., Damas, O.M., Prioleau, S.E.D., & Castello, O.G. (2024). The Effect of Pollutants on IBD: a scoping review protocol. OSF Registries. https://doi.org/10.17605/OSF.IO/V8JEM 4. Links to other publicly accessible locations of the data: N/A 5. Links/relationships to ancillary or related data sets: N/A 6. Was data derived from another source? No If yes, list source(s): -------------------- DATA & FILE OVERVIEW -------------------- 1. File list (filenames, directory structure (for zipped files) and brief description of all data files): A. Filename: 20240430_ScR_PollutantsIBD_FinalSearchResults.xlsx Short description: Search strategy details only-Contains PRISMA flow diagram counts, search strategies completed on 20240430 B. Filename: 20240430_ScR_PollutantsIBD_Results.csv Short description: Cover sheet of search detail contains data for PRISMA flow diagram or chart [http://prisma-statement.org/prismastatement/flowdiagram.aspx] C. Filename: 20240430_ScR_PollutantsIBD_Strategies.csv Short description: Search Strategies for review including sources: PubMed (NLM), Embase (Elsevier), Environmental Science Index (ProQuest), ProQuest Public Health, Web of Science Core Collection (Clarivate Analytics), ProQuest Dissertations & Theses Global, TRIP Pro, and MedRxiv D. Filename: 20240430_ScR_PollutantsIBD_ForScreening.txt Short description: deduplicated citation file, is compatible with Rayyan or other citation managers, contains 3,365 citations 2. Relationship between files, if important for context: 20240430_ScR_PollutantsIBD_ForScreening.txt contains all of the citations to deposit into Rayyan or other systematic review screening tools such as Covidence or Abstrackr. Files B and C are contained as tabs in file A and are provided as separate .csv files. 3. Additional related data collected that was not included in the current data package: N/A 4. Are there multiple versions of the dataset? yes/no If yes, list versions: No Name of file that was updated: i. Why was the file updated? ii. When was the file updated? Name of file that was updated: i. Why was the file updated? ii. When was the file updated? -------------------------- METHODOLOGICAL INFORMATION -------------------------- 1. Description of methods used for collection/generation of data: To identify studies to include or consider for this scoping review, the review team worked with a librarian (OGC) to develop detailed search strategies for each database. The PRISMA-ScR extension was followed for search reporting. The librarian (OGC) developed the search for PubMed (NLM) and translated the search for every database searched. The PubMed (NLM) search strategy was reviewed by the research team to check for accuracy and term relevancy. All final searches were peer-reviewed by another librarian following the Peer Review of Electronic Search Strategies (PRESS checklist). The databases included in this search are: PubMed (NLM), Embase (Elsevier), Environmental Science Index (ProQuest), ProQuest Public Health, Web of Science Core Collection (Clarivate Analytics) using a combination of keywords and subject headings. A grey literature search included ProQuest Dissertations & Theses Global, TRIP Pro, and MedRxiv. All final searches were performed on April 30, 2024 by the librarian and were fully reported. The full search strategies as reported by the librarian are provided in Appendix(___). They are also archived at [TUScholarshare record DOI]. A summary of the search results: ₯ PubMed (NLM) from 1809 to 4/30/2024 (1,081 results) ₯ Embase (Elsevier) from 1974 to 4/30/2024 (1,721 results) ₯ Environmental Science Index (ProQuest) from 1781 to 4/30/2024 (1,119 results) ₯ ProQuest Public Health from 1934 to 4/30/2024 (263 results) ₯ Web of Science Core Collection (Clarivate Analytics) from 1900 to 4/30/2024 (1,034 results) ₯ ProQuest Dissertations & Theses Global from 1637 to 4/30/2024 (88 results) ₯ TRIP Pro from 1867 to 4/30/2024 (127 results) ₯ MedRxiv from 2019 to 4/30/2024 (29 results) The search resulted in 5,462 studies. 2,004 duplicate studies were found and omitted by the librarian [OGC] using EndNote 20. This resulted in 3,365 records to screen from databases or registers and 93 records to screen from other methods, resulting in a total of 3,458 records. Studies were screened by title and abstract by two blinded and independent reviewers. If a tiebreaker was needed, a third reviewer was called in. This process was repeated for full text article screening and article selection. 2. Standards and calibration information, if appropriate: The citations can be deposited into a systematic review software for screening and is formatted for importing into Rayyan [https://rayyan.qcri.org/] a free screening tool. The file is also compatible with the Covidence (requires a subscription or free trial) [https://www.covidence.org/] and Abstrackr (free) [http://abstrackr.cebm.brown.edu/] systematic review screening tools. 3. Describe any quality-assurance procedures performed on the data: N/A 4. People involved with sample collection, processing, analysis and/or submission: N/A ΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡ DATA-SPECIFIC INFORMATION FOR: 20240430_ScR_PollutantsIBD_ForScreening.txt ΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡΡ 1. Number of databases searched: 4 databases, 3 grey literature sources 2. Number of citations: Rayyan file contains 3,365 citations from databases (after deduped via Endnote 20. 3. Specialized formats or other abbreviations used: File is compatible to import to Rayyan and citation manager tools.