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Models for the retention of duplicate genes and their biological underpinnings
Assis, Raquel Conant, Gavin Holland, Barbara Liberles, David A. O'Reilly, Malgorzata M. Wilson, Amanda E.
Assis, Raquel
Conant, Gavin
Holland, Barbara
Liberles, David A.
O'Reilly, Malgorzata M.
Wilson, Amanda E.
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Journal article
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2024-02-12
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Biology
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https://doi.org/10.12688/f1000research.141786.2
Abstract
Gene content in genomes changes through several different processes, with gene duplication being an important contributor to such changes. Gene duplication occurs over a range of scales from individual genes to whole genomes, and the dynamics of this process can be context dependent. Still, there are rules by which genes are retained or lost from genomes after duplication, and probabilistic modeling has enabled characterization of these rules, including their context-dependence. Here, we describe the biology and corresponding mathematical models that are used to understand duplicate gene retention and its contribution to the set of biochemical functions encoded in a genome.
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Assis R, Conant G, Holland B, Liberles DA, O'Reilly MM, Wilson AE. Models for the retention of duplicate genes and their biological underpinnings. F1000Res. 2024 Feb 12;12:1400. doi: 10.12688/f1000research.141786.2. PMID: 38173826; PMCID: PMC10762295.
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F1000 Research Ltd
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F1000Research, Vol. 12
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