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    PoInTree: A Polar and Interactive Phylogenetic Tree

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    Name:
    PoInTree a polar and interactive ...
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    Genre
    Comparative Study
    Journal Article
    Date
    2005
    Author
    Marco, Carreras
    Eleonora, Gianti
    Luca, Sartori
    Edward, Plyte Simon
    Antonella, Isacchi
    Roberta, Bosotti
    Subject
    Algorithms
    Databases, Protein
    Evolution, Molecular
    Phylogeny
    Proteins
    Sequence Alignment
    Sequence Analysis, DNA
    Sequence Analysis, Protein
    Software
    Permanent link to this record
    http://hdl.handle.net/20.500.12613/5653
    
    Metadata
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    DOI
    10.1016/s1672-0229(05)03009-3
    Abstract
    PoInTree (Polar and Interactive Tree) is an application that allows to build, visualize and customize phylogenetic trees in a polar interactive and highly flexible view. It takes as input a FASTA file or multiple alignment formats. Phylogenetic tree calculation is based on a sequence distance method and utilizes the Neighbor Joining (NJ) algorithm. It also allows displaying precalculated trees of the major protein families based on Pfam classification. In PoInTree, nodes can be dynamically opened and closed and distances between genes are graphically represented. Tree root can be centered on a selected leaf. Text search mechanism, color-coding and labeling display are integrated. The visualizer can be connected to an Oracle database containing information on sequences and other biological data, helping to guide their interpretation within a given protein family across multiple species. The application is written in Borland Delphi and based on VCL Teechart Pro 6 graphical component (Steema software).
    Citation to related work
    Elsevier BV
    Has part
    Genomics, Proteomics & Bioinformatics
    ADA compliance
    For Americans with Disabilities Act (ADA) accommodation, including help with reading this content, please contact scholarshare@temple.edu
    ae974a485f413a2113503eed53cd6c53
    http://dx.doi.org/10.34944/dspace/5635
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